Basic Statistics

Raw Counts

Name Value
Rows 1,829
Columns 22
Discrete columns 19
Continuous columns 3
All missing columns 0
Missing observations 2,481
Complete Rows 614
Total observations 40,238
Memory allocation 977.3 Kb

Percentages

Data Structure

Missing Data Profile

Univariate Distribution

Histogram

Bar Chart (with frequency)

## 10 columns ignored with more than 50 categories.
## DepMap_ID: 1829 categories
## cell_line_name: 1736 categories
## stripped_cell_line_name: 1829 categories
## CCLE_Name: 1827 categories
## alias: 112 categories
## RRID: 1672 categories
## Subtype: 177 categories
## Sanger_Model_ID: 1153 categories
## lineage_subtype: 105 categories
## lineage_sub_subtype: 84 categories

QQ Plot

## Warning: Removed 1376 rows containing non-finite outside the scale range (`stat_qq()`).
## Warning: Removed 1376 rows containing non-finite outside the scale range (`stat_qq_line()`).

Correlation Analysis

## 13 features with more than 20 categories ignored!
## DepMap_ID: 614 categories
## cell_line_name: 608 categories
## stripped_cell_line_name: 614 categories
## CCLE_Name: 614 categories
## alias: 28 categories
## RRID: 613 categories
## sample_collection_site: 33 categories
## primary_disease: 28 categories
## Subtype: 98 categories
## Sanger_Model_ID: 614 categories
## lineage: 29 categories
## lineage_subtype: 65 categories
## lineage_sub_subtype: 57 categories
## Warning in cor(x = structure(list(COSMICID = c(905933L, 905938L, 907053L, : the standard deviation is zero

Principal Component Analysis

## 9 features with more than 50 categories ignored!
## DepMap_ID: 614 categories
## cell_line_name: 608 categories
## stripped_cell_line_name: 614 categories
## CCLE_Name: 614 categories
## RRID: 613 categories
## Subtype: 98 categories
## Sanger_Model_ID: 614 categories
## lineage_subtype: 65 categories
## lineage_sub_subtype: 57 categories
## Warning in plot_prcomp(data = structure(list(DepMap_ID = c("ACH-000001", : The following features are dropped due to zero variance:
##  * depmap_public_comments_